high-throughput-sequencing

Python library to access Gene Expression Omnibus Database (GEO)

nim wrapper for htslib for parsing genomics data files

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

Sequence alignment tools

Find and visualize rearrangements in DNA sequences

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

vSNP -- validate SNPs

mGEMS Genomic epidemiology with mixed samples

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

A toolset for handling sequencing data with unique molecular identifiers (UMIs)

command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig

Infer metadata for your downstream analysis straight from your RNA-Seq data

vSNP -- validate SNPs

use the noise

uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)

Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, based on an extension of the BUM-HMM method.

Processing, quality control and analysis of GAM datsets

Sargasso disambiguates mixed-species high-throughput sequencing data.

basepair bio: a single binary with many useful genomics subtools.